rs29694012 SNP Detail

Summary

• ID
  rs29694012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28752213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCCACATT CAGTACAGGA CCTGGATTAA GAGGACAATT
  CCACACACAC ACAATGTCAG AAGACAAGGT ACAGCGACCT TGGGGTCCTT TGGCTTTGGT
  Y
  TTGAGGAGGT TGGGAATCTA TTTAAGGCAG TGAACTTATA CGCTGGCACT GGATGCAGTT
  ACCACAGGTC CAGGCTACCT CTTTGCTTGG TCAATTACTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46872750	NES10834887	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29694012					SNP	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872750	NES10834887	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28752213 () rs orientation: forward

Symbol	Name	Function Class
Rr574616	regulatory region 574616	1372 bp distal
Rr574617	regulatory region 574617	151 bp distal
Rr574618	regulatory region 574618	within coordinates
Rr574619	regulatory region 574619	279 bp proximal
Rr574620	regulatory region 574620	1429 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	Intron
Tssr28653	transcription start site region 28653	152 bp downstream
Tssr28654	transcription start site region 28654	84 bp downstream