rs29694009 SNP Detail

Summary

• ID
  rs29694009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28751544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTATCCT ACAACTCTCA
  TGTGATCCAG TGAGTCTCCA ATGCACAGCC TCCCCAGTTA GAGCATTATA GATGTGCGCC
  ACCGCATCTG GCTCCGCACT CTCATCTTGA GATACACTGA CTTAATAATA ACAGTAGAAA
  GCACATTGCC ACTATCTACT GAGAACTTTT TCTGTGCCAA ACATTTATCA CGTTATTTCC
  Y
  TTAATCCCCT CAACAAAACA AAATGAGTGT GCTATCTTCC CTATTTTATC AGGCCAAAAA
  TCAAACAGTA GAAACCTAAG ACACAGAAAA GTCACAGGGT TTGACTCGCT TAAGTTCATC
  CTCACTAAAA TGCTGTGATT CCAACCCCAG TGCAGATCCC TCCACACCTC ACACAGATAA
  CCGATGCTGC CACACTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46872747	NES10834886	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29694009					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872747	NES10834886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28751544 () rs orientation: forward

Symbol	Name	Function Class
Rr574616	regulatory region 574616	703 bp distal
Rr574617	regulatory region 574617	373 bp proximal
Rr574618	regulatory region 574618	519 bp proximal
Rr574619	regulatory region 574619	948 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	508 bp upstream
Tssr28652	transcription start site region 28652	1654 bp downstream
Tssr28653	transcription start site region 28653	506 bp upstream
Tssr28654	transcription start site region 28654	551 bp upstream