rs29694006 SNP Detail

Summary

• ID
  rs29694006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28751454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCAAGA CACGTAAGCA
  GAATTCACTG GAAAGCCAAG GCTATAGCAA GCACACTACG GCTCCCAACC AGGCTCTCTA
  TGTGTAGCCA AGGCTATCCT ACAACTCTCA TGTGATCCAG TGAGTCTCCA ATGCACAGCC
  TCCCCAGTTA GAGCATTATA GATGTGCGCC ACCGCATCTG GCTCCGCACT CTCATCTTGA
  R
  ATACACTGAC TTAATAATAA CAGTAGAAAG CACATTGCCA CTATCTACTG AGAACTTTTT
  CTGTGCCAAA CATTTATCAC GTTATTTCCC TTAATCCCCT CAACAAAACA AAATGAGTGT
  GCTATCTTCC CTATTTTATC AGGCCAAAAA TCAAACAGTA GAAACCTAAG ACACAGAAAA
  GTCACAGGGT TTGACTCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss46872744	NES10834885	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs29694006					SNP	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872744	NES10834885	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28751454 () rs orientation: forward

Symbol	Name	Function Class
Rr574616	regulatory region 574616	613 bp distal
Rr574617	regulatory region 574617	463 bp proximal
Rr574618	regulatory region 574618	609 bp proximal
Rr574619	regulatory region 574619	1038 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	598 bp upstream
Tssr28652	transcription start site region 28652	1564 bp downstream
Tssr28653	transcription start site region 28653	596 bp upstream
Tssr28654	transcription start site region 28654	641 bp upstream