rs29693050 SNP Detail

Summary

• ID
  rs29693050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28751266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGACCTTC ATGTTCCTGT
  CATTTGGCCA CCGGTTCTTA CATTTCCTCT GCTGTAAACT GGCTCCATCC AGATGGACTG
  TGTGGATGGC AGTGACCACA GCTGGCAGTC CCAGGGAAGC TACCCAAACT TTGGTATCTC
  CCCCAGTATT TTTGTATCAG ATGCCACAGG GGATTCCTAG GAAGAAACAG GGTCAAGACA
  Y
  GTAAGCAGAA TTCACTGGAA AGCCAAGGCT ATAGCAAGCA CACTACGGCT CCCAACCAGG
  CTCTCTATGT GTAGCCAAGG CTATCCTACA ACTCTCATGT GATCCAGTGA GTCTCCAATG
  CACAGCCTCC CCAGTTAGAG CATTATAGAT GTGCGCCACC GCATCTGGCT CCGCACTCTC
  ATCTTGAGAT ACACTGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss46872738	NES10796587	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs29693050					SNP	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872738	NES10796587	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28751266 () rs orientation: forward

Symbol	Name	Function Class
Rr574615	regulatory region 574615	1820 bp distal
Rr574616	regulatory region 574616	425 bp distal
Rr574617	regulatory region 574617	651 bp proximal
Rr574618	regulatory region 574618	797 bp proximal
Rr574619	regulatory region 574619	1226 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	786 bp upstream
Tssr28652	transcription start site region 28652	1376 bp downstream
Tssr28653	transcription start site region 28653	784 bp upstream
Tssr28654	transcription start site region 28654	829 bp upstream