rs29692075 SNP Detail

Summary

• ID
  rs29692075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28750142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAC AGCCCCGCGA TGAAGACAAA
  Y
  GCAGTGACTT CAAGGCAGAC TTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45385955	mCV24251497	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		C
ss46872723	NES10796720	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T		C		C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29692075					SNP	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872723	NES10796720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28750142 () rs orientation: forward

Symbol	Name	Function Class
Rr574615	regulatory region 574615	696 bp distal
Rr574616	regulatory region 574616	within coordinates
Rr574617	regulatory region 574617	1775 bp proximal
Rr574618	regulatory region 574618	1921 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	1910 bp upstream
Tssr28652	transcription start site region 28652	252 bp downstream
Tssr28653	transcription start site region 28653	1908 bp upstream
Tssr28654	transcription start site region 28654	1953 bp upstream