rs29691867 SNP Detail

Summary

• ID
  rs29691867
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108792048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAAACAA AAAACACAAA
  ACAAAAAACA CAAAACAAAA AACAAAAAAC AAAAAACAAA ACAAAACAAA ACAAAAGGAC
  CAAGCAAATA AAAAAACAGG AGTAGAAACA GAATAAGAAA GACCGGAAGA TAGAAGAACC
  AGTGTTTTCC AAAAATCAGC CGGAACACAA CAGTCACTCC CCAGCAGTCT TTGGGCCCTG
  W
  GTGCTTTCTA CGATTTTAAA TAATAAAGAG CTGGAAAAGA CTGTGGGAAA GAGCTCTAAG
  AAAAGGGAAA TGGATAATGG AGGCGTTTTT ATTCCAGAGG ATTCTGTGAG TTCCAAGGCT
  GCTTTGTCAG TGATTTCCCT CCGGCTGCCT TGCTGCCAGC TGGGCCCTCC GTGCCCACCT
  CTCTCTGTGC CTGTGGTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46870195	NES10706606	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	T	A	A	A		A	T		A
ss320867037	CHEV_3_108687650	CHEVERUD	SCREENING_POP	f	SNP											T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29691867					SNP	A	A	A	T	A	A	T	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870195	NES10706606	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108792048 () rs orientation: forward

Symbol	Name	Function Class
Fndc7	fibronectin type III domain containing 7	Intron
Rr583339	regulatory region 583339	1092 bp proximal