rs29691704 SNP Detail

Summary

• ID
  rs29691704
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGCCTGAGAT CTGAATTTTG AACCCAGGAA TCCACATGCT GGAAGGAGAG AAATGATCCT
  TATGAGTTGT TCTTTGAAAT CCATATGTGC TCCCTGACAC ATAATCCTCC CATCCACATA
  CACACAGGAG GCAAAACCAA GAATGTTAAT GGTTTGACTT GGTCCCACTT TCCAGAAAAA
  TCCATGTTAT GAGTAAGGTT CAGCTGAAGT ATTCCCTTAG AGTTCTAATA AAGTATATGA
  ATAAGACATT TCTAGAGCAT ATCTTACACA AATTGGGATG GAAGAATGGA GCTCAGGTTT
  W
  TTTCCCATTA ATTTATTTAT TTATTCACTG ATCGCAGCCA CACACCCCTA CAATTTTTTA
  AACATGCGTG TGTATAGGAT GTACATGTGA CACAGCACTG ATATGGACAT CAGAGGACAA
  CCTGAAGAAG TTGTCTCTTC GCTGTGTGGA TTCTGGAGAT AGAGAGAGGT CTGCTGTTTG
  GTGTAGTGAG CGTCAAGGAC CTTCCTGGAC TAAGCCATCT CTTAGTCCCA TCAAATTTCA
  CATGTAACAT TTTTTTACAG TAACAAAATG AACTTTATTC ATCTAGAACT ATACTGTGAC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46332516	mCV23074498	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss46387563	mCV23074682	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29691704					SNP	?	?	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291089 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1766 bp upstream
Gm8449	predicted gene 8449	1633 bp downstream
Gm35915	predicted gene, 35915	482 bp downstream
Gm37805	predicted gene, 37805	468 bp downstream
Rr684790	regulatory region 684790	1671 bp distal
Rr684791	regulatory region 684791	752 bp distal
Tssr86547	transcription start site region 86547	1597 bp downstream
Tssr90904	transcription start site region 90904	1917 bp upstream
Tssr90905	transcription start site region 90905	1845 bp upstream
Tssr90906	transcription start site region 90906	1824 bp upstream
Tssr90907	transcription start site region 90907	1797 bp upstream
Tssr90908	transcription start site region 90908	1760 bp upstream
Tssr90909	transcription start site region 90909	1737 bp upstream
Tssr90910	transcription start site region 90910	1703 bp upstream
Tssr90911	transcription start site region 90911	1675 bp upstream
Tssr90912	transcription start site region 90912	1257 bp upstream