rs29690711 SNP Detail

Summary

• ID
  rs29690711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108869559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTGGCTT TTACTTACAT
  TTTGAGTTTG TGTTCACCTC CCAGCTTTGA TAAACACATT TCTTTGCACA TTAGAAGGTT
  TCTTAACATT CCCAACCAGG GATCAGCATA GTTCTTGTAG GGAACCTTTA GCATTTAGTA
  CCTCCCCCCC CCCCCACCCC CGCATCATAG CTCTCCAACT CTGCTTGAGC TGAGGCATAA
  Y
  GTAATTTTAT GTTTAACATA AGCATGCAGT ACTTCCAGTT TGGAAGCATC GTCCAAAGCA
  GCTGTTGGAT TTAGTTTGTC ATAGTCTGCT CTTTCCTCTT AGGGGCTCTC AGTATGCACA
  GTGCAGGCGC TCTACCATTG AGCCTTGTCT CCAGCTCAGA TCCTTGTTCT GAAGTCACAG
  TCTTACCCTT TAGCAGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46870690	NES10703253	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29690711					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870690	NES10703253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108869559 () rs orientation: forward

Symbol	Name	Function Class
Gm65815	predicted gene, 65815	220 bp upstream
Henmt1	HEN1 methyltransferase homolog 1 (Arabidopsis)	Noncoding-Transcript-Variant
Rr583357	regulatory region 583357	104 bp distal