rs29689926 SNP Detail

Summary

• ID
  rs29689926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108971539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGAGTC TGTAGGCGAA
  TGACGACGAC AATCCAAATA CATCACCTGT ACAGGCTGGA CTACATACTG GTCACGTGGC
  TGATCGGACA AACAACTGAT GTACGGTTCC ATCACGTGAT CCAAGTAGAA CAAGTAGGCG
  CAGAACCTCC ATGGAGTAGA CTAGGGTGAG TGCATCTCAC AGCAACGTGG AGCCGGCACT
  Y
  GCATTTCTGA CAGAAGCTCC TGGTATAGTG GTCCATGACC TCTATATACT GATGGGCACA
  TGCTCAAATC TGAGCTACTT AGTGTTCTGA AAACCGATGA CCTATCAGTC CACTACCACA
  AATTAGTGCT CCCAGTGGCT GGAATTTTAC CTGGTTTCTT TTGTACCATA GCCTTCTCAC
  TCTGCATAAT AACTGCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46871944	NES10697190	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29689926					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871944	NES10697190	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108971539 () rs orientation: forward

Symbol	Name	Function Class
Gm36778	predicted gene, 36778	within coordinates
Rr397947	regulatory region 397947	905 bp downstream
Rr583384	regulatory region 583384	907 bp distal
Rr583385	regulatory region 583385	1004 bp distal