rs29689802 SNP Detail

Summary

• ID
  rs29689802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108868718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTGTGAG GCATGGGAGT
  CCAGAGGCAA CTCAACCAGG CATGCTCTGC AGTGTCAGAG CCACGAGTGT CCATCTTCAT
  AACCACGGTA GACACAGAGG GTTAACCTGG CATAGCCTAC ACTGAAGTGT TCCAGCTGCC
  CAGTGTGCTT TGCTGCTTGT TGCTAGGCAA CACTACTGAC CCTTCCTGGG CTCACATAAG
  R
  CAGCGAGGGA AGTTGAGACA TAGTCTGTGT TCTGAGGGGC TGCATGCATA CTTGGTCATC
  TCCTAAGGAA CCAGAACAAA CCGCCTGAGC CGCCTGGCAG AGTCTGGCTT CCCTGAGATG
  TGTTCCGGGG CTGCAGAGCC ATTCCCTGGG CAAGCGCTCT GTGAACCCTT ATTCTTAAAC
  TGAATCTTCA AGGGTTCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46870681	NES10703242	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29689802					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870681	NES10703242	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108868718 () rs orientation: forward

Symbol	Name	Function Class
Gm65815	predicted gene, 65815	1061 bp upstream
Henmt1	HEN1 methyltransferase homolog 1 (Arabidopsis)	Noncoding-Transcript-Variant
Rr583357	regulatory region 583357	within coordinates