rs29689037 SNP Detail

Summary

• ID
  rs29689037
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108971443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCATCTT TTATATTTTA
  AAAAAAAGCA TCATCAGGAT CATAAAGCTA TGATAGTTAC ACTCTACACA CTCCCAAGGT
  GCTTTAAAAT GATTATGTTT TGAGTCTGTA GGCGAATGAC GACGACAATC CAAATACATC
  ACCTGTACAG GCTGGACTAC ATACTGGTCA CGTGGCTGAT CGGACAAACA ACTGATGTAC
  K
  GTTCCATCAC GTGATCCAAG TAGAACAAGT AGGCGCAGAA CCTCCATGGA GTAGACTAGG
  GTGAGTGCAT CTCACAGCAA CGTGGAGCCG GCACTCGCAT TTCTGACAGA AGCTCCTGGT
  ATAGTGGTCC ATGACCTCTA TATACTGATG GGCACATGCT CAAATCTGAG CTACTTAGTG
  TTCTGAAAAC CGATGACCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46871935	NES10697184	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29689037					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871935	NES10697184	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108971443 () rs orientation: forward

Symbol	Name	Function Class
Gm36778	predicted gene, 36778	within coordinates
Rr397947	regulatory region 397947	809 bp downstream
Rr583384	regulatory region 583384	811 bp distal
Rr583385	regulatory region 583385	908 bp distal