rs29688953 SNP Detail

Summary

• ID
  rs29688953
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108867090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCAGTGA GCTCTTCTGG
  CCTCAGTGGG TGCCAGACAT GCATATGGTG CACAGACATA CACACAGGCA AAAGACTTAC
  ACACAAAATA ATAATTTTTT TTTAAAAATT AAAGTTAGTG CCTACTGGTA GAAACCTGAC
  TGGGAAATCG TTGGCATTAG AATTAGAAGC AAACCAGCTA GCTAGTGCCT GCATGTATTT
  K
  GCTCCCAGTA AAATCAAGGC TTTTTACAAT GAGTAGGCTC TGACACATAC GCAGGAGGCA
  CTCATGGTTC CTGTGGGGCT GAATTGCTGA TGATTTAAAA GGCTTTGGTA TTTTGTTTGG
  CTTTCTGCCC TTCAGGTTTA TACAACCTCC TACCCGAGTT TACAGCAGGA GAAGGTGCTC
  AAGTTTGTTC TGGTTGGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46870672	NES10703449	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29688953					SNP	T	T	T	T	T	G	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870672	NES10703449	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108867090 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Henmt1	HEN1 methyltransferase homolog 1 (Arabidopsis)			Intron
				Noncoding-Transcript-Variant
Rr583357	regulatory region 583357			1274 bp proximal