rs29688944 SNP Detail

Summary

• ID
  rs29688944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108866535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTTCT CTCCCTTTCT
  GTCTTTCTTT TTTGACAGGG TCTCACTCTG TACCCCCAGC TGGCCTAGAC TTGCTATGTA
  GACCAGACTG GCCTTGAACA CATACAGATC TCCTATCTCT ACTTCTCATG TGCCAGGATT
  AAAATCGTGC ATCACCACAC CTGGCTAAAT GACCTAATTT TGAGGTTCCT CATAGAAAGA
  Y
  CCTTCAGGCT GGATGAGTGT TGGCCGGGTT GGCCTATGGC ACACTTTCAG AGTGCCTGGC
  CCCTCATCTT ATCTTTCAAA AGAATACATT CTTCATTTGG TGGAATCATT TTCATTTACT
  CTTAATTTTT CTTTTGCTTG TGTTTCACTT CATTGTCTGG AGTGGCCTGG CTCTCTTGGC
  TCAGCAGCTG TCCTGCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46870663	NES10703470	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29688944					SNP	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870663	NES10703470	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108866535 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Henmt1	HEN1 methyltransferase homolog 1 (Arabidopsis)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr583357	regulatory region 583357			1829 bp proximal