rs29688058 SNP Detail

Summary

• ID
  rs29688058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108971239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGAAAAT ACCAGGGGTT
  TAAAGTCTGA GCCTATCTGT CACACGGCCA TTTGTTCAGG TCTAGGGCTG AAGTGACCCT
  TCCGTTGTCA CCATGGTCCT GTGTCCTCCT GATGTACTGT CCCTTTTGTT TCTATTTGTC
  CATATTATTT TAATACTTCT CCACTTTTAA GTACTGGTTT TAATTTTGTG ATTGTAACAC
  R
  GAAGATCCAT CTTTTATATT TTAAAAAAAA GCATCATCAG GATCATAAAG CTATGATAGT
  TACACTCTAC ACACTCCCAA GGTGCTTTAA AATGATTATG TTTTGAGTCT GTAGGCGAAT
  GACGACGACA ATCCAAATAC ATCACCTGTA CAGGCTGGAC TACATACTGG TCACGTGGCT
  GATCGGACAA ACAACTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46871926	NES10697178	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		G	A	A	G		A
ss320867479	CHEV_3_108866841	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29688058					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871926	NES10697178	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108971239 () rs orientation: forward

Symbol	Name	Function Class
Gm36778	predicted gene, 36778	within coordinates
Rr397947	regulatory region 397947	605 bp downstream
Rr583384	regulatory region 583384	607 bp distal
Rr583385	regulatory region 583385	704 bp distal