rs29688048 SNP Detail

Summary

• ID
  rs29688048
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28610988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTCTTC TGGAGTGTCT
  GAAGACAGCA ACAGTGTACT TACATATAAT GAATAAATAA ATAAAATCTT TAAAAAAAAT
  TACCCCAGCC ACGCCAACAT AGCTGTCACC TGATGGTGTT TATTTTGAAT GGCAGGTGGC
  TAGTTGTTGA CCCCGTGACT TGTTTTCCTT ATGAAGTAAA GGTGTGACCC CGAGGGATGT
  W
  AATGTCTGTT TGAAATGTGT GTTTTATGAG ATCCATCTAA TTAGACATCA GCTCTTGATT
  GTCTGCAAGT TGGAAGCTTT GAGGTCCTGA CCCCTTGCTC CCAAGAGCCT TATGGACATG
  TGCATACTTT GTGTGCGGCC AGGATGGTAG TGTGGGTGGC CTCTGACTGG CTCTGGTCCT
  TGTTTTTGGT CTCCTGCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46870836	NES10803782	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29688048					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870836	NES10803782	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28610988 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574598	regulatory region 574598			345 bp distal
Rr574599	regulatory region 574599			1156 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant