rs29683683 SNP Detail

Summary

• ID
  rs29683683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:77194917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG TCCCCTCTAT TACTCTGTAG
  R
  AGCTTCATAT ATGAAAAACA GCATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss39108060	mCV24822578	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G		A
ss49119528	NES12425968	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	A	A	A		G	G
ss144698298	ENSMUSSNP755208	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							A
ss324446867	CHEV_13_77186059	CHEVERUD	SCREENING_POP	f	SNP													A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29683683					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49119528	NES12425968	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77194917 () rs orientation: forward

Symbol	Name	Function Class
Rr482873	regulatory region 482873	1032 bp distal
Rr482874	regulatory region 482874	1556 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1	Intron
Tssr123272	transcription start site region 123272	607 bp downstream
Tssr123273	transcription start site region 123273	827 bp downstream