rs29682381 SNP Detail

Summary

• ID
  rs29682381
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:90649010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG AAAGCTGTGC GAAGAGGACT
  S
  GAACAAGTCG GAAAGCAATG AGGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45849583	mCV23646186	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				C		G
ss46596316	NES10455781	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	G	G		C	G	G	G		C	G	C	C		C
ss148814474	ENSMUSSNP605751	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						G
ss321607435	CHEV_5_90930177	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29682381					SNP	C	C	C	C	G	G	C	C	G	G	G	G	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596316	NES10455781	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90649010 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	Intron
Gm43449	predicted gene 43449	within coordinates
Rr614365	regulatory region 614365	within coordinates
Rr614366	regulatory region 614366	207 bp distal
Tssr47136	transcription start site region 47136	1510 bp downstream
Tssr47137	transcription start site region 47137	1448 bp downstream
Tssr47138	transcription start site region 47138	747 bp downstream
Tssr47139	transcription start site region 47139	250 bp upstream
Tssr47140	transcription start site region 47140	279 bp upstream
Tssr47141	transcription start site region 47141	293 bp upstream
Tssr47142	transcription start site region 47142	381 bp upstream
Tssr51784	transcription start site region 51784	368 bp downstream