rs29681790 SNP Detail

Summary

• ID
  rs29681790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102279882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGCCCCAACC ACAAAGGGGG TGGATCTGCA TCCTCTGTTT TACAAAGCAC ACCCACTCGC
  CAGAGAAAAC TCAACCCCAT TCCAAAAGGA GATGAGACCA GAGCCCTCAA TCAAATCAAA
  CCTCATGAAT TAAGTTCTAA ATTTTAAACT CCCTTTTATT GAAATATAAG TTTGTTTAGT
  CTATTTACAG CACAATTTAT GCACATATAT ACACACAGAA GGCAAATTCT GTCAAATAAA
  AAAGTTTTCT TACTAAAAAA TTAAAATTAA AAAAAGTAAA GTGCATGAAA CTGATTTTTT
  Y
  CCCCCTCTGG TGAACATCAT CATTGTCAAT TTTGGTCAAT TGGGAGACGC AGGAAGAAAT
  TCATTATTGA CTCTGCTTAT AACTAGTCCT GAATTCATAG CCTTCAGGCC AAAATGATAG
  GAGTTCAGGA ATGGGTGAGA CAAACTGTCA GGGTCTGGAG GGCTCCCAGG GGCGGGGAAG
  TCTTGCTCTC TTTGTCCTAT CCAGAGCTGT CCCTCAGCTT GGAACAGTTA TCTCACCATC
  GCGCGCCGGA ACAAAGGGCG AACACAGGAA GGGGGTTTCA CCAGCCCTTG TCACAGCCTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45353566	mCV23728298	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29681790					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102279882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	628 bp proximal
Fjx1	four jointed box 1	mRNA-UTR
Rr561693	regulatory region 561693	1385 bp distal
Rr561694	regulatory region 561694	1202 bp proximal
Rr561695	regulatory region 561695	1786 bp proximal