rs29679605 SNP Detail

Summary

• ID
  rs29679605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109721247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG AAGATGGCGG CGCTGGGCGA
  R
  CCTGTCCGGC TGGAAAGGGG TGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45353586	mCV23788761	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147205631	ENSMUSSNP963105	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320456057	CHEV_2_109731059	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29679605					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109721247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12038	CpG island 12038	within coordinates
Gm54141	predicted gene, 54141	49 bp upstream
Lin7c	lin-7 homolog C, crumbs cell polarity complex component	Coding-Synonymous
Rr397174	regulatory region 397174	within coordinates
Rr562499	regulatory region 562499	91 bp distal
Rr562500	regulatory region 562500	625 bp distal
Rr562501	regulatory region 562501	39 bp distal
Rr562502	regulatory region 562502	within coordinates
Tssr19303	transcription start site region 19303	20 bp downstream