rs29678428 SNP Detail

Summary

• ID
  rs29678428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:26012089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCACCA GTATCAGCAG
  TAAGCAGCGC GGAACAGATC TGCCCATGAA ATGAACTTAA AGAAGGGCTG AGGCGACCCC
  ACACACTCCC GTAACATATG CACGGGAGAA GCGGGAACCG AGTCCCAGCC TCGGGCGGGC
  GAAAAGCCAT GGAGATGGCT AATCTCACCT CCCCCAGCCC ACACACCCTT GAGTTTTCTT
  R
  GAGAAGAGTC CGGAGACCTG ACAACTTTGC GGAGATGCAG AAACAGGGAC AAGCCAAAAG
  CCCCCTCCCA CTGCAGCGAA ACCCAGTGTC TCCCAAAGTT GGAGTTGGCA CCAAAGAGAA
  AGGGAGGCAG TGACGACCCC TGGCACCAAC CGGCCCACCT AGCTAGGGAA GACGGACACG
  GGCCGAATCT GATGCGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45353723	mCV25059856	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss146382759	ENSMUSSNP5046088	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs29678428					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26012089 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54107	predicted gene, 54107			746 bp upstream
Nacc2	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing			Intron
				Noncoding-Transcript-Variant
Rr553214	regulatory region 553214			within coordinates
Rr553215	regulatory region 553215			731 bp proximal
Tssr23074	transcription start site region 23074			661 bp downstream
Tssr23075	transcription start site region 23075			692 bp downstream