rs29676176 SNP Detail

Summary

• ID
  rs29676176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77592166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGACCAGCG GGTCCTTCAG CAGAGGGAGC ACCATTGGGG
  ACTACAATGC CACTATGAGA CATAATGTCC GTGACCTCCG GGATGCCTTC AAGCAGAGAG
  R
  GCGAGATTCT GAAGGGGCCT TTTACTGTGA ATGCACCATT TTCTAAATAG GGAGTCTCAG
  ACCTAGATAA AAAATAAGTG AATGTCAGGA AGCTACCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39602604	mCV23424469	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss147551893	ENSMUSSNP7200518	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325701895	CHEV_18_77743209	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29676176					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77592166 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Cpgi10275	CpG island 10275			1924 bp distal
Rr541132	regulatory region 541132			1870 bp distal
Rr541133	regulatory region 541133			469 bp proximal