rs29675725 SNP Detail

Summary

• ID
  rs29675725
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:96591753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGCACC TCCTGACTCA
  TGACCTCATT AACACACTTC TCTGTGTAAA ATGCTTTATA ACACTGTCTG TCCAATTATC
  TCTTTTCCAA TTCCTTGGAG TAGATGTTTC TCTTGGCACC TTCAAATTAG GAAACATGCA
  CGAAGTACCT CAATAAAAAG TGTCTCTGAC AACAAGGCAG ATCTGCTTGG TTGTCAGGAA
  K
  AAGGTACATT TTGATTGTGA AGGGCACTGT AAATTTTCAC AATTAATAAC ATTGCAAAGG
  ATTCCAAGAG CCATACCAGA CACCATCATG GTTCTCTGTA GCTCCTTTGC AGCTAGTCAG
  GAACCTTAAA GTGTATCAAA AAATTCATGG TTTGTTTAGT CTCCCTTTTT ATGTGTTTAA
  TGGAGCATAT CAGAAGCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45353488	mCV24364606	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss146981831	ENSMUSSNP6881958	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss320410849	CHEV_2_96601565	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29675725					SNP	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:96591753 () rs orientation: forward

Symbol	Name	Function Class
Lrrc4c	leucine rich repeat containing 4C	Intron
Rr561438	regulatory region 561438	1864 bp proximal