rs29675318 SNP Detail

Summary

• ID
  rs29675318
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:76040223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGGAGTG ACCCCTATAA
  TTCCAGAATT TACTTGGTAC ACACTAAGTG CTCAATAAAA CCCAGCGCCT TACAAATCCA
  TTTGATGAAT AACTGAACAG AAAAAAGAAG CTAAAATTAG TAGGAAAAGA ATTATCAAGA
  GCAAGGAGCA AAATCCCCAC TAGGAAGAAA AGATTCTCAC AGGATAGATA ACACTGCCAC
  K
  TGAGTTTTTA TTTAGGACAC TCTGACCTTG GTAGTGACCT GGATTCAAAA AGGAGTGTGG
  CTGCCTATAT TAGCCTGACC TGACAATGGG GCAGTCAGAA CAGCAAGGTG CAGCCAGAAG
  AGCCAAGAGC ATAAGAAAAC ACAGCTTGCC TGAAGAAACC AAACTCCAAG AAGGGGGTCT
  CTCAGCTTCT CACTTTGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45850189	mCV22889939	ABI	CRAMUS_MOUSE	f	SNP		G	T					T		T
ss51745805	NES14733875	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	T	T		G	T	T	T		T	T	T	G		G
ss148693399	ENSMUSSNP5193127	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
ss321571983	CHEV_5_76275588	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29675318					SNP	G	G	T	T	G	T	T	T	G	T	T	T	T	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51745805	NES14733875	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:76040223 () rs orientation: forward

Symbol	Name	Function Class
Gm73081	predicted gene, 73081	within coordinates
Rr613503	regulatory region 613503	847 bp distal
Rr613504	regulatory region 613504	506 bp proximal
Rr613505	regulatory region 613505	924 bp proximal