rs29674908 SNP Detail

Summary

• ID
  rs29674908
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75512977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTTATG TATATGAGTA
  CACCATTGTT CTCTTCAGAC ACACCAGAAG GTGGCATCAG ACCCCGTTAC AGATGGTTGT
  GAACCACCTT GTGGTTGCTG GGAATTGAAC ACAGGACCTC TGGAAGAGCA GGCAGTGCTC
  TTAACTGCTA AGCCACCTCT CCAGCCCCCT TTTTTCCCTC TTTTTTTTTT TTGTTTTTTT
  W
  AAAATTCATG TCATGTATGA GTACACTGTA GTTGTCTTCA GACACACCAG AAGAAGGCAT
  CAGATCCCAT TGTAGATGGT TGTGAGCCAC CATGTTGCTG GGAATTGAAC TCAGGACCTC
  TGGAAGAGCA GCCAGTGCTC TTAACCTCTG AGCCATCTCT CCAGCCCCCC TTTTCCCACC
  TCTTAAGACA AAATTTCATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45352865	mCV25010608	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss320351243	CHEV_2_75520690	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs29674908					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75512977 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	within coordinates
Rr559542	regulatory region 559542	774 bp distal
Rr559543	regulatory region 559543	428 bp distal
Rr559544	regulatory region 559544	140 bp distal
Rr559545	regulatory region 559545	43 bp proximal
Rr559546	regulatory region 559546	129 bp proximal
Tssr18460	transcription start site region 18460	566 bp upstream