rs29674747 SNP Detail

Summary

• ID
  rs29674747
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127967108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTTGGA ATCACAAAGG
  CCTCAGGAAG ATCAAGGGAT TTTTTTTTCG ACCCCCTTAT GGTTTTCCCA GCTCGGCCTG
  AACTCCGCTG CTCCATGGTC GCCAGCATCG GCGGACCGAT GGATAGACAG TTCCTGGCGT
  ACACTGTGAG CCCCAAACAT TTCGAGGCTC CCAACACCGC TCATGGCACA ACCGTCTTTC
  M
  TTGGTAGCCC CCCTCCTTTT CCTTGTAGTT ATTCTTTTCC AGCTAACTTT CTCATTCCCC
  TATTTTATAT GCTTGTCGTG CCCGCCCATC GCTCCCTGAA GCTTCCCGCT TCTCTTGTCT
  CTCAACTGTC CTTCTCACCA CCACCTCTGC CTCTTAAGTA ACTGGGCACT AGGGAAACAA
  ACATATAAAC CACAACAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45351959	mCV22674673	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29674747					SNP	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127967108 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	850 bp upstream
Gm74510	predicted gene, 74510	1029 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Rr564648	regulatory region 564648	641 bp distal
Rr564650	regulatory region 564650	1885 bp distal
Rr564651	regulatory region 564651	360 bp proximal
Rr564652	regulatory region 564652	965 bp proximal
Rr564653	regulatory region 564653	1040 bp proximal
Tssr20042	transcription start site region 20042	842 bp upstream