rs29673171 SNP Detail

Summary

• ID
  rs29673171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77592272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCTGAAGG GGCCTTTTAC TGTGAATGCA CCATTTTCTA
  AATAGGGAGT CTCAGACCTA GATAAAAAAT AAGTGAATGT CAGGAAGCTA CCCTGTGCCA
  Y
  CCAACACCAG GACAGTCCCG GATCCCCAGA TCTGGCAGCT CTTCACTTTG ATAATTCTGC
  CCTGTAGGTA GGCATTGCTG GGTTCAGTCC TGGAGCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39603657	mCV23424200	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147551903	ENSMUSSNP44300	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325701897	CHEV_18_77743315	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29673171					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77592272 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Rr541132	regulatory region 541132			1976 bp distal
Rr541133	regulatory region 541133			363 bp proximal