rs29671576 SNP Detail

Summary

• ID
  rs29671576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119071831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGTGCTTG TCACCAAGCC TGGCAATTTG AGTTTGATGT
  CCAGAGCCCA CTTGGTAGAG GAGGAGACTG ACTGCTGTAC ATTGACCTCC ACACACATGC
  Y
  TTGTCATGCC CGTGCCCACA TCACATACAC AGCATGTACA TACTAGACAA ACAGATGTAC
  TGTAACAATA ATAAACCTGA AGGCAAGGTT TAGGAAGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45349845	mCV24414214	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss147326945	ENSMUSSNP2329112	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss320474362	CHEV_2_119067086	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29671576					SNP	C	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119071831 () rs orientation: forward

Symbol	Name	Function Class
Rr563451	regulatory region 563451	714 bp distal
Rr563452	regulatory region 563452	1245 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron
Tssr19620	transcription start site region 19620	703 bp downstream