rs29671204 SNP Detail

Summary

• ID
  rs29671204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9773206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATTCAAG GAAGCCCATA
  GCCGAGGTAG AGTACAGCCG AGGAGACCCG ACCGCCCTGT CTGCCAGTGC GCATGGATAC
  CCCTCTAACG CTATAATGCT TTGGGGTTTC TTGGGTAATA TGGAACTTCC CCTGGTTATA
  TATTATGTCT GCAAACACAA CAGGGTCAGT GTGACACACA GACAAATTGC TTCTGCATGG
  R
  TAAGTAACCA CCACATTTCA GGAGACAAAG AACAATTCAC TTTAAACCGT GCCCGCAGTG
  ACAGGTTTCT AAAATACACA TGGGAGAGCA TTTAAGTCAC AGTGACCTCT GATATAATTT
  TGTGTAGCTG CAAATCATGA AACACTTTCA GAAACACAGA CAAAGGATCC ATCTCTTGTA
  CACACACAGT TTTGTTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49556900	NES12900376	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29671204					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556900	NES12900376	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9773206 () rs orientation: forward

Symbol	Name	Function Class
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	Intron
Rr573486	regulatory region 573486	274 bp proximal
Rr573487	regulatory region 573487	953 bp proximal