rs29670461 SNP Detail

Summary

• ID
  rs29670461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9773455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCCGCAG TGACAGGTTT
  CTAAAATACA CATGGGAGAG CATTTAAGTC ACAGTGACCT CTGATATAAT TTTGTGTAGC
  TGCAAATCAT GAAACACTTT CAGAAACACA GACAAAGGAT CCATCTCTTG TACACACACA
  GTTTTGTTTC TTCATCCACA CCCTGATTAA TCAATGTGAT TTATAAAGAG CAAACTTTGT
  R
  GATGATAGCT GCTGTGGAAT TGCTCGGGGC AGAGCAGCGG GTGCACCAGG AGCCTGCACG
  CAGGGCTCTC CAGGGCTCCC TCCACTTCTG AACGCGTCTC ATCTTTCCTC TTTCTTGTTC
  TCTTAACAGG AGGCGGCTGC TGGAATAGGT GAAGTGTGGG GGGTACCAGC CTAGCATGAC
  AGTCCAGGGA GGGAGGATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49556897	NES12900379	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29670461					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556897	NES12900379	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9773455 () rs orientation: forward

Symbol	Name	Function Class
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	Intron
Rr573486	regulatory region 573486	25 bp proximal
Rr573487	regulatory region 573487	704 bp proximal