rs29670064 SNP Detail

Summary

• ID
  rs29670064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9071615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA ATGAAAACCC TAAGACATTA
  R
  GCTGGCCTCA TAATCTTCTG TTAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49556090	NES12905045	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	A	A		A	G		G
ss320649433	CHEV_3_9006555	CHEVERUD	SCREENING_POP	f	SNP							A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29670064					SNP	G	A	G	G	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556090	NES12905045	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9071615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12969	CpG island 12969	1684 bp distal
Rr374475	regulatory region 374475	1829 bp downstream
Rr374476	regulatory region 374476	1275 bp upstream
Rr573367	regulatory region 573367	1342 bp distal
Rr573368	regulatory region 573368	695 bp distal
Rr573369	regulatory region 573369	247 bp proximal
Tpd52	tumor protein D52	1791 bp upstream
Tssr32574	transcription start site region 32574	1920 bp upstream
Tssr32575	transcription start site region 32575	1805 bp upstream
Tssr32576	transcription start site region 32576	1784 bp upstream