rs29670021 SNP Detail

Summary

• ID
  rs29670021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131870957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACTCTTG GGACTAAAGC GCGCGCAGCA TTGAGAAGCC
  TCGTGCTGAG CTTGCCACTG AAGCACAGTG GCTATCTGTC CAGTGGCTGT TCCAAATCTG
  Y
  CCCTGTCGGG ACTCCACCAT TCTGCTGCCT CCCAGGGCGC ACTCGGAGAT AAAGCTGGGT
  GCAGAGTAAG CGCTCTAATA CACGAGTGGC CAGGCCGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45349329	mCV23344123	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss147616100	ENSMUSSNP4462105	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss320508273	CHEV_2_131854773	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29670021					SNP	T	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131870957 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12299	CpG island 12299			26 bp proximal
Gm31179	predicted gene, 31179			1414 bp upstream
Gm75461	predicted gene, 75461			949 bp upstream
Rassf2	Ras association (RalGDS/AF-6) domain family member 2			Intron
				mRNA-UTR
Rr367316	regulatory region 367316			252 bp upstream
Rr397324	regulatory region 397324			868 bp upstream
Rr565378	regulatory region 565378			1287 bp distal
Rr565379	regulatory region 565379			542 bp distal
Rr565380	regulatory region 565380			459 bp proximal
Rr565381	regulatory region 565381			1007 bp proximal
Tssr20292	transcription start site region 20292			1353 bp downstream
Tssr20293	transcription start site region 20293			683 bp downstream
Tssr20294	transcription start site region 20294			943 bp upstream
Tssr26436	transcription start site region 26436			124 bp downstream
Tssr26437	transcription start site region 26437			151 bp downstream
Tssr26438	transcription start site region 26438			751 bp downstream
Tssr26439	transcription start site region 26439			771 bp downstream
Tssr26440	transcription start site region 26440			778 bp downstream
Tssr26441	transcription start site region 26441			787 bp downstream
Tssr26442	transcription start site region 26442			808 bp downstream