rs29669912 SNP Detail

Summary

• ID
  rs29669912
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153473598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAACCCCT CCAAATAGGA
  GTCTTCCAGA AATCAGTGGC AACAGCAAAA TCTAGCCATT TCCCTGGCCT TTGAAGTTAG
  ACATTTGGTT GTGAATTCCT GGTTCCAGTT TTGCAATTTT TCTGCTTCCA CCTTTCTTTC
  AAGAGGTGGC AATGACAGGT ATGGACTACT AATAAATTCT ATTTTTGTTA TTTACTTATT
  K
  TGATATAGGG TCTCACTATG CAGCTCTGGA CAGTCTAAAA CTCATGAATT AAGAGACCGA
  CCTGCCTTGG CTTTCCAAAT GCTGAAGTTA AGGTGAATAC TACTCTGTGT TTGTTTGTTT
  GTTTGTTTTT AATTCTTCAA ACTGGCCTGT GTGTGTCTGG GGTTGAGGGC CCCACTTCCT
  GGGAAGCTAA GACCCCGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45350428	mCV23862302	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29669912					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153473598 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			620 bp proximal
Rr567709	regulatory region 567709			1222 bp distal
Rr567710	regulatory region 567710			1052 bp proximal
Tssr26915	transcription start site region 26915			1001 bp downstream
Tssr26916	transcription start site region 26916			1097 bp downstream