rs29669640 SNP Detail

Summary

• ID
  rs29669640
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9871043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCTTGA TTCCTCGTCA
  TCTTTAGAAT CCTATGTTTG ATTCATATAC TATACATTGA GTTTTAGTTG GACTTAGCAG
  AACAGAGGAA AGTATGTCTA TGCCATCTTT CTGGAGGCAG AGAGAAAATA CTTCCCTTTG
  TATTGAGGCT AAATTTAGAA TTGTGATTAA GCAAGGAAAT TGCATTTGCT ACACTGAAAA
  W
  TTTTATCAAG TAGTAGCAGA AGGTTACATG AAATCAATTT GGGATGGTTA TTAAAGACTT
  AAAGGGTTTT TAAGTAATAT GCTTTAAATA TTTTTTTTTC AAAGAAAATA CTTAGTGATG
  TTCACTTTCG TTTAGAAAGC AGAAGGAGAT CTTTTATGTG TGGGTGATAA TTCGTAATTA
  CTACCAAGAA CTCCTATGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49556386	NES12896837	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29669640					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556386	NES12896837	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9871043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1			Intron
				mRNA-UTR
Rr573508	regulatory region 573508			669 bp proximal
Rr573509	regulatory region 573509			1870 bp proximal