rs29669635 SNP Detail

Summary

• ID
  rs29669635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9871955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGGGCT AGGAAAATTC
  ATTACAATAC TGCTTGATGC AGCTATTTTC TCATTGCTGG GTGAACAGAA GGAAACAGCA
  CGGTACCGTA CTCAGTGAAC TATAAAGCAA GCATTATCAA GCCGTTCTGA AGATGCAGGA
  GAATTAAGCT TCCTCACCAG CTTGACATAC AGCCAATCCG AAAGTATCCA ACAAAGAGCA
  Y
  GTTACAGTGA GCAACATGTA GTGCAGATTA ACTAGCTGTG TTGAAAACTT GCACTGTGCT
  CTACGAGTGT AGTCAACATG AGAGTTCAAA ACACCACACC TGCCCCAGGA TACCTCTCAA
  GGAAACACTA GCCATTCCTG CCCAGTCTCG ACACACGAGA ATATGTGTCC TTTCTGTGAA
  AAGGCCACAA GGGACAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49556381	NES12896846	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29669635					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556381	NES12896846	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9871955 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1			Intron
				mRNA-UTR
Rr573508	regulatory region 573508			24 bp distal
Rr573509	regulatory region 573509			958 bp proximal