TCCTTGGGCT AGGAAAATTC ATTACAATAC TGCTTGATGC AGCTATTTTC TCATTGCTGG GTGAACAGAA GGAAACAGCA CGGTACCGTA CTCAGTGAAC TATAAAGCAA GCATTATCAA GCCGTTCTGA AGATGCAGGA GAATTAAGCT TCCTCACCAG CTTGACATAC AGCCAATCCG AAAGTATCCA ACAAAGAGCA Y GTTACAGTGA GCAACATGTA GTGCAGATTA ACTAGCTGTG TTGAAAACTT GCACTGTGCT CTACGAGTGT AGTCAACATG AGAGTTCAAA ACACCACACC TGCCCCAGGA TACCTCTCAA GGAAACACTA GCCATTCCTG CCCAGTCTCG ACACACGAGA ATATGTGTCC TTTCTGTGAA AAGGCCACAA GGGACAGTGT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
CAST/EiJ |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49556381 | NES12896846 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | T | C | C | C | C | C | C | C |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
CAST/EiJ |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs29669635 | SNP | C | C | C | C | T | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49556381 | NES12896846 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:9871955 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Pag1 | phosphoprotein associated with glycosphingolipid microdomains 1 | Intron | ||||||
mRNA-UTR | ||||||||
Rr573508 | regulatory region 573508 | 24 bp distal | ||||||
Rr573509 | regulatory region 573509 | 958 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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