rs29669624 SNP Detail

Summary

• ID
  rs29669624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9167884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGAGGTTT GTTCTCCGTG TGCCAAATAA AAGGCCACCT
  TTTAATGTAG TCTATATTAC ATATTTGTCC CTGAACTCAG CATAGGCCTG CCATAGAGAA
  R
  GCTGAATACA AGCCTAGTAA GTACATAGAT CCAACTCACG TTTCTTCCCT TTTGGTTTTA
  ACTAAAATGA GTAAGTAAAT AAATAGATAA TTAGGTAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49555890	NES12900230	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	G	A	A		A	A	G		G
ss134572054	ENSMUSSNP7175812	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320649751	CHEV_3_9102824	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29669624					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49555890	NES12900230	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9167884 () rs orientation: forward

Symbol	Name	Function Class
Rr374480	regulatory region 374480	within coordinates
Rr573385	regulatory region 573385	1712 bp distal
Rr573386	regulatory region 573386	987 bp distal