rs29668882 SNP Detail

Summary

• ID
  rs29668882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9872336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCACAA GGGACAGTGT
  GCCAGAGCTG AGGTCTGCCC ACAGCTCCTA TATCCAAGTG CCTTAGAACT AAGAATAATG
  CTAAATAAAC TTAAGGCTTG TTTGGTCACA CTGAGTCTTC TAGATACAAA GCCGAGTTGT
  CAATGCAATC AACAGACTGT GCTTCACAGT CAGCATGGGA AGTTGTTCAA TGTTACAGTT
  Y
  ACATTACAGC AGGAGGGGTT TTGTTTGTTA GATTTTTGGT GGTAGGGCCC TGTGATCTTT
  TTCATATACA ACGCTAATTG CTTTAGCAGG CATATCATAT TTTTAACATG GCTGACATAC
  AGTAGCTAAT AACAGAATAA ATTATGAAAG CATACTTTAA ATCAGAACAT AGAGATAGGA
  GTAATATAAA GGGAAAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49556378	NES12896852	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29668882					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556378	NES12896852	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9872336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1			Intron
				mRNA-UTR
Rr374496	regulatory region 374496			1719 bp upstream
Rr573508	regulatory region 573508			405 bp distal
Rr573509	regulatory region 573509			577 bp proximal