rs29668877 SNP Detail

Summary

• ID
  rs29668877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9872917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAAAATA CTCAGACAAC
  TGGTTAATGA AGTGTAGTTT CTCAATCATA CCTCATATCA TATGCAAACA CCAGCTTAAG
  ATGAACAATA TACAGTTAAA AATGAAAGAA AAATCCACAA AACTTTGAAT AAGCAAGGTG
  AAAAGTTTCT TTTACCACAA GGTCAAGTTT ACTATCCTCA GTCCTGAGTG GGAAGGACCG
  Y
  CACACACCAC AGCAGTGCTC CGTCTTGAGT GGGAAGGACT GTCACACACC AGCAAATGAA
  GACTATGATA ACACTCAGTT GTGATACGGA TGATGCATGC TGGGATCTCT CTCCCACTGC
  TTGTGGGAGG GAGGATAAGT AGGCTTAATC TCACTGAAAA CAATTCCCAT TTCATGTCAG
  AATGGCTGTG TCTATAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49556373	NES12896868	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29668877					SNP	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556373	NES12896868	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9872917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1			Intron
				mRNA-UTR
Rr374496	regulatory region 374496			1138 bp upstream
Rr573508	regulatory region 573508			986 bp distal
Rr573509	regulatory region 573509			within coordinates