rs29668874 SNP Detail

Summary

• ID
  rs29668874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9873743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTACTTG CATAAGGTCC
  CAGAGACAGC CCAGCGAGCA CTGGGGATAT ACGCATGGGC AATGATGCCC ATTAGTACCC
  AGGGTCCAGT CACTGAGGCA GATAAGCAAG CCCTCAGCTG GAGAGGACAC TGCAGTCATT
  CATGTACTAG ATACTAAAAC ATGGTTATAA AGACCTAAAG TGGCTATGAA AATCCATAGA
  R
  CAATTCTTTC TACTGTTCAC CATGATTTTA GGGGGGGTGT CACAGTTATA AAAATGGAAA
  GACATTGTAG TTGTCACTAG TACCCTTCAA TTATGTGTAC ATAGTGATTG GAATCATTAG
  TGATTCCAAG CTCAAGATCC CTGCAAATAA AGTCTTACTC TTATTTTTAC ATTGTGCAGC
  CATAACTCGT TTTTATCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49556370	NES12896715	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29668874					SNP	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556370	NES12896715	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9873743 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1			Intron
				mRNA-UTR
Rr374496	regulatory region 374496			312 bp upstream
Rr573508	regulatory region 573508			1812 bp distal
Rr573509	regulatory region 573509			468 bp distal