rs29665683 SNP Detail

Summary

• ID
  rs29665683
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9664262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAACAC AATAAATAAG
  TTCGTTTTTA AAAGTTAATT GATTTCATAA TGAATAATAC ACCTAACCTG ACCATTAGCC
  TCCATACACA GAACACACAT GCATGTGCAT ATACATGAAT ACGCACACAC ACATAAATGC
  ATCTTCTACG ATCAAATTCT AACATGGTTT TCCAAAACAT TACCTTCGGT GAAGTGGAAA
  W
  AGTGAATCAT TCTAACTGTA CTACCCCATA CTCAAAGTTA TATTCTGTTC CTTCTTACCC
  ACTAAAGAGC AACTGAGGCT ACTTGCCAAA TTCAGTCCAG GAATTACCTC CTGGCCAGAC
  CATATAATTT TCTTTACATA AATTGTTTGG TTGCCATTGT TTTAAGGTAT ATATCAAAAT
  TACATGCCAA GTTGTGACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49557419	NES12905313	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29665683					SNP	T	T	T	T	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49557419	NES12905313	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9664262 () rs orientation: forward

Symbol	Name	Function Class
Rr374491	regulatory region 374491	within coordinates
Rr573453	regulatory region 573453	867 bp distal
Rr573454	regulatory region 573454	921 bp distal
Rr573455	regulatory region 573455	501 bp proximal
Rr573456	regulatory region 573456	1458 bp proximal
Zfp704	zinc finger protein 704	Intron