rs29665682 SNP Detail

Summary

• ID
  rs29665682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9664325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCTGACC ATTAGCCTCC
  ATACACAGAA CACACATGCA TGTGCATATA CATGAATACG CACACACACA TAAATGCATC
  TTCTACGATC AAATTCTAAC ATGGTTTTCC AAAACATTAC CTTCGGTGAA GTGGAAATAG
  TGAATCATTC TAACTGTACT ACCCCATACT CAAAGTTATA TTCTGTTCCT TCTTACCCAC
  Y
  AAAGAGCAAC TGAGGCTACT TGCCAAATTC AGTCCAGGAA TTACCTCCTG GCCAGACCAT
  ATAATTTTCT TTACATAAAT TGTTTGGTTG CCATTGTTTT AAGGTATATA TCAAAATTAC
  ATGCCAAGTT GTGACTCAGT AAGTTGGCTT GGAAGAACTA GTCATGATCT TATTAGAAAG
  AAAAAGAAGA AAAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49557418	NES12905316	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29665682					SNP	T	T	T	T	T	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49557418	NES12905316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9664325 () rs orientation: forward

Symbol	Name	Function Class
Rr374491	regulatory region 374491	within coordinates
Rr573453	regulatory region 573453	930 bp distal
Rr573454	regulatory region 573454	984 bp distal
Rr573455	regulatory region 573455	438 bp proximal
Rr573456	regulatory region 573456	1395 bp proximal
Zfp704	zinc finger protein 704	Intron