rs29665679 SNP Detail

Summary

• ID
  rs29665679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9664844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTACACCA AGCATCTCCT
  AACTAGAGAA CGAGCACAAC CATCAACAGC AGAGGCACAG CAATCATCCT GATTGACAAC
  CAGATTTGGC TAAGCCATAA TAAGGCTGGT TGTGAGAGGT TTCAAGTACT GTGAAATTCT
  TCAGAAAGCC AGACAGAAAC CATGTCTCAA GAAGAGGCTG CAAGAGGCAG CTGAAGATCC
  R
  AATTAGGCAA ACAGTACTGC GTCACTGGGT CAAGACTGTC CCATACAGAG TTGAAGTTCT
  ATGTTCCACG AGCAGCAGGG CAGGGAGACC TGCTCTGCTC GTGACCTTCA GAGCCCAGGG
  CGCATGCTCA TCTGACTGAG CTGGGTAAAA GTTCAGGCAC GTGCAGTGGC TGTGTCTCAC
  TCCCTCCCCA TTAAAAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49557415	NES12905326	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29665679					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49557415	NES12905326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9664844 () rs orientation: forward

Symbol	Name	Function Class
Rr374491	regulatory region 374491	within coordinates
Rr573453	regulatory region 573453	1449 bp distal
Rr573454	regulatory region 573454	1503 bp distal
Rr573455	regulatory region 573455	within coordinates
Rr573456	regulatory region 573456	876 bp proximal
Zfp704	zinc finger protein 704	Intron