rs29665677 SNP Detail

Summary

• ID
  rs29665677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9664865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGAGAAC GAGCACAACC
  ATCAACAGCA GAGGCACAGC AATCATCCTG ATTGACAACC AGATTTGGCT AAGCCATAAT
  AAGGCTGGTT GTGAGAGGTT TCAAGTACTG TGAAATTCTT CAGAAAGCCA GACAGAAACC
  ATGTCTCAAG AAGAGGCTGC AAGAGGCAGC TGAAGATCCA AATTAGGCAA ACAGTACTGC
  R
  TCACTGGGTC AAGACTGTCC CATACAGAGT TGAAGTTCTA TGTTCCACGA GCAGCAGGGC
  AGGGAGACCT GCTCTGCTCG TGACCTTCAG AGCCCAGGGC GCATGCTCAT CTGACTGAGC
  TGGGTAAAAG TTCAGGCACG TGCAGTGGCT GTGTCTCACT CCCTCCCCAT TAAAAGGTGA
  GTGGGTTCAG GAGATCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49557413	NES12905331	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29665677					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49557413	NES12905331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9664865 () rs orientation: forward

Symbol	Name	Function Class
Rr374491	regulatory region 374491	within coordinates
Rr573453	regulatory region 573453	1470 bp distal
Rr573454	regulatory region 573454	1524 bp distal
Rr573455	regulatory region 573455	within coordinates
Rr573456	regulatory region 573456	855 bp proximal
Zfp704	zinc finger protein 704	Intron