rs29665075 SNP Detail

Summary

• ID
  rs29665075
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8927737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTAATA TAGTTTTTAA
  TGATTAGATT TTTCTTTAGG AAATTAAATG GGACGACTTT AAACAGGAAG GGAACGAAGG
  TTCCTAAAGC AACCAATCTC TCTGTCTGAG ATGATTTTAC GTAGAAACCT TTCAGCACAC
  AGAAACGTAC GCGTTTACAG TCTGGGTGTT TAGTCTGGAC AACCAACACT GATGCTCCTT
  S
  TACAACCCTG AGTTATCAGC CAGCCAAGAC AAATTAAAAA TGTGATGGCA AAACTTTGAC
  ATTTCAGATA TTCACAAAAC CAGCACATGG ATTTAAAAAA TAATATGTTT ATGATGATGC
  TTTATTTTTT AAAATCTGGA ATATTTTGAA TCATTGTGAA TTTTAACAAT AAAGCAAAAA
  TACAGCTGCT TTTGTTTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49554671	NES12910164	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G		C	G	C
ss320648891	CHEV_3_8862677	CHEVERUD	SCREENING_POP	f	SNP								G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs29665075					SNP	G	G	G	G	G	G	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554671	NES12910164	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8927737 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr573330	regulatory region 573330	264 bp proximal
Rr573331	regulatory region 573331	1651 bp proximal
Tssr32560	transcription start site region 32560	593 bp downstream