rs29664387 SNP Detail

Summary

• ID
  rs29664387
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAAGCCT CAGATGGCAC
  CAGACTGGGC CCTCCCCCAT CAATCACTAA TTAGAAAAAT ATCCTGCAGG CCTTGCCTAC
  ACCTTGATCT TATGGAGGCA TTTTCTTGAT TGAGGTTCCC TCCTCTCCGA TAACTTTGGC
  CTGTGTCTGT CTAACCAGAA CAGTAGTCAA TGCGTGGGGG AGGGGGTAAC ATAGTAGAAA
  K
  GAGAACCAGG TTTGATAAGA GTTGGGATTT TTATGTTTTA TCTGGAAGTT GTGGACCTGG
  GTGAGCCTCT GCAGTCCTAC CAGGTGAATT TAACCTGTAA AGGGTCCTCT GAAGGGGAGA
  TGGTCAGGAA TGTCTGTTAC CCGCTTGAGC TGGGTGTGAT GAATCCAGGG GGTGATCCCA
  GCAACCTTGA TAGCAATGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39104685	mCV25044077	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss149030180	ENSMUSSNP3653614	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29664387					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622291 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	1403 bp upstream
Rr480226	regulatory region 480226	1999 bp distal
Rr480227	regulatory region 480227	1092 bp proximal
Rr480228	regulatory region 480228	1190 bp proximal
Rr480229	regulatory region 480229	1810 bp proximal