rs29664173 SNP Detail

Summary

• ID
  rs29664173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8927998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCAGATA TTCACAAAAC
  CAGCACATGG ATTTAAAAAA TAATATGTTT ATGATGATGC TTTATTTTTT AAAATCTGGA
  ATATTTTGAA TCATTGTGAA TTTTAACAAT AAAGCAAAAA TACAGCTGCT TTTGTTTTTG
  AAAAAGCACA GAAGCTAAAC ACTTACTGAT TGAATCTTCT CAATACTATC AAAGTTGTCA
  Y
  AGATTCAAAT TCCAAACCTC AAACTCTGAC AACATCCTGT TTCATAAGGA CACCTCCTCC
  CCGCAGCACA AACCCAGGGA AAGCTCAGAG CTTCTTAATG GTCTGGCACT ACCACCTCCT
  TGGGAAGCTC AAAGTACCTT GCATCACCCA AGGAGCCCAG CTATGAGACA GGTACTCTCA
  GCCTCCATTT AAAGTCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49554669	NES12910167	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	C
ss320648892	CHEV_3_8862938	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs29664173					SNP	T	T	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554669	NES12910167	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8927998 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr573330	regulatory region 573330	3 bp proximal
Rr573331	regulatory region 573331	1390 bp proximal
Tssr32560	transcription start site region 32560	332 bp downstream