rs29664172 SNP Detail

Summary

• ID
  rs29664172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8928201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAAATTC CAAACCTCAA
  ACTCTGACAA CATCCTGTTT CATAAGGACA CCTCCTCCCC GCAGCACAAA CCCAGGGAAA
  GCTCAGAGCT TCTTAATGGT CTGGCACTAC CACCTCCTTG GGAAGCTCAA AGTACCTTGC
  ATCACCCAAG GAGCCCAGCT ATGAGACAGG TACTCTCAGC CTCCATTTAA AGTCAAAAAC
  R
  AGCATGGTGC AACAGGGGAT GCCTGGATGC GTTCTCTCTG GTCGCACAGC CACTCACCTC
  CCCACAACAG GTAGGCATGG ACAGACCGCT GCGGAAGCCC CCAAGCCTTG CCAAGAGCCT
  GAAGAAACCC ACTGGCTTCT GTGGTTGTCC CGGGCAGACT GCTTTTCTAC AGATTCTGGC
  TCCATGCCAG AGTCTAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49554668	NES12910169	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		A	G	A		G
ss320648893	CHEV_3_8863141	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29664172					SNP	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554668	NES12910169	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8928201 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr406711	regulatory region 406711	1914 bp proximal
Rr573330	regulatory region 573330	within coordinates
Rr573331	regulatory region 573331	1187 bp proximal
Tssr32560	transcription start site region 32560	129 bp downstream