rs29664171 SNP Detail

Summary

• ID
  rs29664171
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8928964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACCATGT GAACAAAACA
  TTACAGAGCT TTTGAAACTC CCAAGGCCAC TGCTGTTCAA AGAAAGAAAG GAAGGAAGGA
  AGGAAGGGAG GGAGGGAGGG AGGGAGGGAG GGAGGGAGGG AGGGAGGGAG GGAGGGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGCACT CTTTTAAGAT CTAGGTGCTT TATCTTTTCC
  S
  AAATGCAAAG ATCAAACAGG AACCTTGTTT GTAATCACGG CAATAGTGTC CCCGAGTCCC
  TTGCAGACCA GCAGCAGTGA TGGTGAATGC GGGAGCCCGA CAGTGGTCAA ACCTGAAGGG
  AAGCTCTGGT TGAGGGCAGC CTTCCCTGAT GGCCATCTCC AGACCCAGGC CATAACACTG
  TCTAACCTCT CCACCCTAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49554667	NES12910104	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29664171					SNP	C	C	C	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554667	NES12910104	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8928964 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr406711	regulatory region 406711	1151 bp proximal
Rr573330	regulatory region 573330	98 bp distal
Rr573331	regulatory region 573331	424 bp proximal
Rr573332	regulatory region 573332	1569 bp proximal
Tssr32560	transcription start site region 32560	602 bp upstream