rs29664170 SNP Detail

Summary

• ID
  rs29664170
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8929373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAAGAC TCGAGGCCAC
  TCGGTAACCT GAGCGCTTCC AACCTCACGT GAGAAGAGCT CTACGGGAAG ATAACAATAG
  CTAAATTGCA ATTCGGGAGG AATGCAGAAA ATTGAATAGT TGGACTGACT GTCTTCTCTT
  TCCGACATCA GAGTGAGTAC CCCAGTACAC AAACGATTGC TTGCTTCTTA GTCCATGATC
  K
  CTAGCAACAG ACCCCTGCTT CTAGCTTCCT AGTACCACCG ACGCAATTCC CAATCAACTA
  AAGCTAGTCA AGGGCCAGGT CTATGTCCTT ATTTTACAGA AATGGTACTT TCTTCTCAAC
  CTTATGCAGA TCCAATTCCT CGTCCTTATA ACTCCTATAT ATCTACAGTG TACAAAAAGA
  GCACCAAGGC GGACTGCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49554666	NES12910106	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		G	T	G		T
ss320648899	CHEV_3_8864313	CHEVERUD	SCREENING_POP	f	SNP									T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29664170					SNP	T	T	T	T	T	T	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554666	NES12910106	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8929373 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr406711	regulatory region 406711	742 bp proximal
Rr407269	regulatory region 407269	1784 bp proximal
Rr573330	regulatory region 573330	507 bp distal
Rr573331	regulatory region 573331	15 bp proximal
Rr573332	regulatory region 573332	1160 bp proximal
Tssr32560	transcription start site region 32560	1011 bp upstream