rs29664166 SNP Detail

Summary

• ID
  rs29664166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8930140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACAGGAT GGCAGCTTCA
  CTTAGTAACA TTAACACAGA ACAGTATTTT CAAAACAGAA CTACAAGTTC TCAATGGCCC
  ACTTTGTTGA GAGAGAGAGA GAACATTTTG TGTATTAACT GTATCCTATT ATTCACTGTA
  TAAAATCTTA CCACTATGTT GTGTTTTTTA AACATGTGCT TGTGGTAAGG ATAGTATAAA
  R
  ATAAATGCAT TTGGCCTTAC TTCCCTACAG ATAAGAATTT ATATTCCTCA TCATCATCTT
  TGGTATCTTA CATGTAAGAA GGTCAAATAT CATCCTCCCA ATGACCACTA CATACAGTAC
  AGTACAGCCA CCTCCTGCCT TATTCTGTGA TGAACAAAGA AAGGAACCTG CCTGTAGGAC
  TGGTCCACAG GCAATTCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49554662	NES12910110	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29664166					SNP	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554662	NES12910110	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8930140 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr406711	regulatory region 406711	within coordinates
Rr407269	regulatory region 407269	1017 bp proximal
Rr573330	regulatory region 573330	1274 bp distal
Rr573331	regulatory region 573331	150 bp distal
Rr573332	regulatory region 573332	393 bp proximal
Tssr32560	transcription start site region 32560	1778 bp upstream