rs29664165 SNP Detail

Summary

• ID
  rs29664165
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8930252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAACTGT ATCCTATTAT
  TCACTGTATA AAATCTTACC ACTATGTTGT GTTTTTTAAA CATGTGCTTG TGGTAAGGAT
  AGTATAAAAA TAAATGCATT TGGCCTTACT TCCCTACAGA TAAGAATTTA TATTCCTCAT
  CATCATCTTT GGTATCTTAC ATGTAAGAAG GTCAAATATC ATCCTCCCAA TGACCACTAC
  W
  TACAGTACAG TACAGCCACC TCCTGCCTTA TTCTGTGATG AACAAAGAAA GGAACCTGCC
  TGTAGGACTG GTCCACAGGC AATTCCAACC TGAGGGTATC CTGAGTGCTT TCTCAACAAG
  GCCAACAACA CAACTTTTAA CTAACGTTAG GAAGAGACTG CATCCCCAAA GGCAAGTGAC
  ACAAACTGCA AACCTTAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49554661	NES12910111	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		T	A	T
ss320648901	CHEV_3_8865192	CHEVERUD	SCREENING_POP	f	SNP						A				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs29664165					SNP	A	A	A	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554661	NES12910111	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8930252 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr406711	regulatory region 406711	within coordinates
Rr407269	regulatory region 407269	905 bp proximal
Rr573330	regulatory region 573330	1386 bp distal
Rr573331	regulatory region 573331	262 bp distal
Rr573332	regulatory region 573332	281 bp proximal
Tssr32560	transcription start site region 32560	1890 bp upstream